1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTAAGTTCGCTAGAGATCAGATCTCTAAAGGCGGTTACTCCATTTCTCTGACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCGgtaatttcaattttgataatccggcttcgattttgttgacaatttccaaattcagattcgaattatgctaattcgagtagaaatctggtgtttatgtcaa...
species | Arabidopsis thaliana |
transcript | AT1G61100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCACTTTTGATCG GTTTGTGAGATTTGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTCTEST: gi|125188863|gb|EL203817.1|EL203817
genomic: CCACTTTTGATCGgtaatttcaa ... ttaattgtagGTTTGTGAGATTTGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTCT
EST: ACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCG GTTTGTGAGATTTGEST: gi|152036000|gb|AU237303.2|AU237303
genomic: ACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCGgtaatttcaa ... ttaattgtagGTTTGTGAGATTTG
EST: ACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCG GTTTGTGAGATTTGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTCTEST: gi|125013339|gb|EL085608.1|EL085608
genomic: ACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCGgtaatttcaa ... ttaattgtagGTTTGTGAGATTTGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTCT
EST: ACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCG GTTTGTGAGATTTG
genomic: ACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCGgtaatttcaa ... ttaattgtagGTTTGTGAGATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAGTTCGCTAGAGATCAGATCTCTAAAGGCGGTTACTCCATTTCTCTGACTCCTCCTTCTTCTCACTCTTCTTGGTTCACCAAATCCACTTTTGATCGgtaatttcaattttgataatccggcttcgattttgttgacaatttccaaattcagattcgaattatgctaattcgagtagaaatctggtgtttatgtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC