1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGAGTGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAGgtttctctctcttatgtttctttattccctgtagtgttgttgtgttttgatgatgttgatgactcttgtagaagtgctttgtgtttcatctagctctattcttaattccag
species | Arabidopsis thaliana |
transcript | AT1G60490.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAG ATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGEST: gi|116469040|gb|EG511632.1|EG511632
genomic: TGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAGgtttctctct ... ttaattccagATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAG
EST: TGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAG ATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGEST: gi|86068050|gb|DR363807.1|DR363807
genomic: TGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAGgtttctctct ... ttaattccagATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAG
EST: TGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAG ATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGEST: gi|164016778|gb|ES213032.1|ES213032
genomic: TGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAGgtttctctct ... ttaattccagATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAG
EST: GTGCAATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAG ATTGAAAACTAC
genomic: GTGC-ATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAGgtttctctct ... ttaattccagATTGAAAACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTGTCTCCATCGCAGAGGAGAAAAAACCAGAGCTTTACATTGAGTGTGCATTGTACATTGATGGAGCTCCTTTTGGCCTTCCCATGAGAACAAGgtttctctctcttatgtttctttattccctgtagtgttgttgtgttttgatgatgttgatgactcttgtagaagtgctttgtgtttcatctagctctattcttaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT