1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCTCTTCGTCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGgtataaacaatgaagattgattctttttagtttttatcaaattaaaaatgtcaactttatagtggtttcttgtgtttgttgtag
species | Arabidopsis thaliana |
transcript | AT1G60080.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTG GACTTGTTT-AACTGCTGATGGGTCTGCTCTTGCTAAGATTGGTTCCACTAEST: gi|19875055|gb|AU235886.1|AU235886
genomic: TCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGgtataaacaa ... tttgttgtagGACTTGTTTCAACTGCTGATGGGTCTGCTCTTGCTAAGATTGGTTCCACTA
EST: TCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTG GACTTGTTTCAACTGCTGATGGGTCTGCTCTTGCTAAGATTGGTTCCACTEST: gi|152035385|gb|BP852218.2|BP852218
genomic: TCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGgtataaacaa ... tttgttgtagGACTTGTTTCAACTGCTGATGGGTCTGCTCTTGCTAAGATTGGTTCCACT
EST: TCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTG GACTTGTTTCAACTGCTGATGGGTCTGCTCTTGCTAAGATTGGTTCCACTA
genomic: TCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGgtataaacaa ... tttgttgtagGACTTGTTTCAACTGCTGATGGGTCTGCTCTTGCTAAGATTGGTTCCACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCTCTTCGTCCTGATGGAAGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGgtataaacaatgaagattgattctttttagtttttatcaaattaaaaatgtcaactttatagtggtttcttgtgtttgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA