Sequence
atgc intronic sequence ATGC exonic sequenceATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGGAGAAACTGgtacaataaaacaacctatatatgtcacaaagttgtatgtatatctaaacatttcttggtgtatataattaagatatatatgttgtatgtaaataattggcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G60060.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G60060.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G03740.1 (Glycine max), 5'ss of exon 2
ATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGGAGAAACTGgtacaataaaacaacct------atatatgtcacaaagttgtatgtatatctaaacatttcttggtgtatataattaagatatatatgtt-gtatgtaaataattggcag
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GTGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttttcagtgttgagtgatgagtgttaacttcaacactgtatagtgcaggattattgtgttagtttggctaacata-gtgtgtttatatatatatgcatg-cag
upper sequence: AT1G60060.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G03940.1 (Glycine max), 5'ss of exon 2
ATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGGAGAAACTGgtacaataaaacaacctatatatgtcacaaagttgtatgtatatctaaacatttcttggtgtatataattaa-gatatatatgttgtatgtaaataattg-gcag
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GTGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGgtaatgtttttcagtgt-tgagtagtgttaacttcaacac-tagctagtgcaggattgttgtgtttggttaacagtagtgagtttataactttatatgcatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163989528|gb|EL977611.1|EL977611EST: AGCTTATGATAGATCAAGAGGGAACAGGAGAAACTG GATCTTGGTTTGGGAAGATGGTTTTTGCAACTTTGCAGC
genomic: AGCTTATGATAGATCAAGAGGGAACAGGAGAAACTGgtacaataaa ... taattggcagGATCTTGGTTTGGGAAGATGGTTTTTGCAACTTTGCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGGATGGTCAAGGAGCTTATGATAGATCAAGAGGGAACAGGAGAAACTGgtacaataaaacaacctatatatgtcacaaagttgtatgtatatctaaacatttcttggtgtatataattaagatatatatgttgtatgtaaataattggcag
- - - - - AAGGAG
- - - - - - GGAGCT
- - - - - - - GAGCTT
- - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAA