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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACTTAGTAATCAGAAGTACAGAGATTTTAAAGAAGAGTTTTCTGATGTTGGTTTGATGACTGGGGATGTGACTATCGATCCTAATGCCTCTTGTCTTgtaagtaccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatttgttcttagttttgtgttctttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G59760.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 2
GGCACTTAGTAATCAGAAGTACAGAGATTTTAAAGAAGAGTTTTCTGATGTTGGTTTGATGACTGGGGATGTGACTATCGATCCTAATGCCTCTTGTCTTgta-agtaccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatttgttcttagttttgtgttctttgtttcag
|||  | ||||| || |||||||| || || ||||||||||| |||||||| ||  | |||||||||||||| ||||| || || ||||| |||||| | |||  ||| | ||   | | ||  |  |  || ||    | | | |||  || | | | | |||| | |||  |       | |||
GGCTTTGAGTAACCAAAAGTACAGGGAATTCAAAGAAGAGTTCTCTGATGTCGGCCTCATGACTGGGGATGTTACTATTGAGCCAAATGCATCTTGTTTGgtatggtatccttatgattctttgaaatcatccca----tctatgttaaatgttttgt-tacttaatcttg-atctgaaaatgcag

upper sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 2
GGCACTTAGTAATCAGAAGTACAGAGATTTTAAAGAAGAGTTTTCTGATGTTGGTTTGATGACTGGGGATGTGACTATCGATCCTAATGCCTCTTGTCTTgtaagtaccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatttgttcttagttttgtgttctt-tgtttcag
|||||| || || || |||||||| || || ||||||||||| |||||||||||| | |||||||||||||| || || || || |||||||| ||||| |||  | |||| |   ||   ||    | | |||   | || |   ||||    || |  ||||      |   ||     | |||
GGCACTGAGCAACCAAAAGTACAGGGAGTTCAAAGAAGAGTTCTCTGATGTTGGTCTCATGACTGGGGATGTCACAATTGAGCCGAATGCCTCCTGTCTGgtac-tgccttctgccct---caccactctttcaattgcttgtac-atttatgcttggaacttaaaaccattccctgacaatgcag

upper sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 2
GGCACTTAGTAATCAGAAGTACAGAGATTTTAAAGAAGAGTTTTCTGATGTTGGTTTGATGACTGGGGATGTGACTATCGATCCTAATGCCTCTTGTCTTgtaag------taccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatt-tgttcttagtt-ttgtgtt----ctttgtttcag
|||||| || || || ||||| ||||| ||||||||||| || || |||||||||||||||||||||||||| ||||| || || ||||| ||||| || ||| |      || | |||| | | || | | || ||  |   |   |||| |  || |  | | || |  |||  |   ||     | ||||||||
GGCACTCAGCAACCAAAAGTATAGAGAATTTAAAGAAGAATTCTCAGATGTTGGTTTGATGACTGGGGATGTCACTATTGAGCCCAATGCTTCTTGCCTGgtaggcccagttatcatttata-tatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcag