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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag

Basic information

species Arabidopsis thaliana
transcript AT1G58210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g74510.1 (Oryza sativa), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
   | |||| ||||| | || ||||||||||| ||||||||||||||||| |||||||| || || || || ||||||||||| ||   | |||| || |||                    |  | |||| ||  ||  | || || | | ||||  |||  | | | |     |||  |     |   | |  |  ||||       |  || ||  ||                     
GGCAGGATGCTGCAGCGGGCGGCGAGCAATGCGTATTCATGGTGGTGGGCGAGCCACATCCGCACCAAGCAGTCCAAATGGCTTGATAGCCATCTCCAAGgtga-----------------ccgtccaata-tataatcttgatcttttttatcatatatt--tgatttctgtgagttatgtatgtacttatatgggagatttgtt---ggtttgttcaatcc-------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G062587_T01 (Zea mays), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
 ||| |||| ||||| | |||||||||||||| |||||||||||||||||||||||||| || || ||||| || |||||||||||  || | || || ||||  | | |       ||| |    | ||   ||  || ||   |  ||  |  | |||| | ||||   ||||    |  |||            | |||    |                                   
GAAAGGATGCTGCAGCGGGCAGCGAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCCGCACCAAACAGTCAAAATGGCTCGACAACCACCTCCAAGgtatttgttt-------catcttgtttgat--caaccttgttgcatgatgatt--ttcatttcacagt---aaattagtaatgcatctgtctgcccttcattccttacctgtcc----------------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G438704_T01 (Zea mays), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
 || ||||| ||||| | |||||||||||||| |||||||||||||||||||||||||| || |  ||||| || |||||||||||  || | || || ||||   |   |||||||    | |  |     |||| | |        ||||| || | | | | | | |  |                                                                     
GAAGAGATGCTGCAGCGGGCAGCGAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCCGCAGCAAACAGTCAAAATGGCTCGACAACCACCTCCAAGgtaa--tgaatgattcatgcatgatttt----taatgtgcgc------tgtgtgattcgtccttgaattcgcag--------------------------------------------------------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM5G856812_T01 (Zea mays), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
      ||| | | | | || || |||||||||||||| ||||||||||| |||||||| || |  | ||||||||||||||||||  |||||||||| |||| || |  ||     |||    | ||| ||||     |  |         | ||  | |  | ||         || | | |     ||||   |||  || |  |                                  
------ATGCTACGGCGCGCGGCAAGCAATGCTTATTCGTGGTGGTGGGCTAGCCACATCCGCAGCACACAATCCAAATGGCTCGACAACAATCTTCAAGgta-gtataatgcccgccataatgcttaagaatagatcccccac-----aaatgatagagttttgagaaatcgtgatttacaaccttttaacattaatg--tacatca----------------------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G049510_T01 (Zea mays), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataa--tattcttattttgtgt-gtcatgc--attcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
|    |||| ||| | | |  |||||||| || || |||||||||||||| |||||||| || |  |  || ||||||||||||||  |||||||||| ||||  | | |||  |  ||       ||| |||||   ||    ||     |  | ||||   | || | | | | ||   || |  || |   |  |                                                 
ACCGCGATGCTGCGGCGCGTGGCGAGCAACGCCTACTCATGGTGGTGGGCGAGCCACATCCGCAACACGCAGTCCAAATGGCTCGACAACAATCTTCAAGgta-atattttgcctaccacgatgtttaagaataaatcatcaacataacacgaagacatgagaaatcatgacttccaaccttttaaggctatatattaatt----------------------------------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G10160.1 (Glycine max), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacg----tttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
      ||||||   || ||||| | |||||| ||||||||||||||||||||||||||  | ||||| |||||||||||||| ||||| | ||| |  ||||      | ||||  |  | || |  | | ||| |  | |   |   || | | | ||  ||   | | ||||      ||||| |       |     |  ||   ||                                   
------ATGTTGGGAAGGGCAGCAACCAATGCATATTCATGGTGGTGGGCAAGCCACATCAGGACAAAGCAATCCAAATGGCTAGAACAAAGTCTCCGAGgtatatatttctcttagtatatatatagcttgatacttttctctcttagttttctattatctatcattaattcca------tcagaacg------ctttattattttgccat----------------------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G10150.1 (Glycine max), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaa--taataatattcttattttgtgtgtcatgcattcctcagtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
      ||||||   |||||||| | |||||| ||||||||||||||||||||||| ||  | ||||| |||||||||||||| ||||| | ||| || || |  |    |   || | |   |  ||   | ||| | ||||   || || |  |||  ||   ||| |  ||     ||||| |     | |                                                  
------ATGTTGGGAAGAGCAGCAACCAATGCATATTCATGGTGGTGGGCAAGCCATATCAGGACAAAGCAATCCAAATGGCTAGAACAAAgtctccaaggcatataatatctctctcttaatatatagcttgatacttttctctcttagttttccat-tatctatcatt--aattccatcagaacgctttatc--------------------------------------------------

upper sequence: AT1G58210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g07610.t01 (Vitis vinifera), 5'ss of exon 1
AAAAAGATGTTGCAGAGAGCAGCGAGCAATGCTTATTCATGGTGGTGGGCAAGCCACATACGTACAAAACAATCCAAATGGCTCGAACACAATCTTCAGGgtacgtttcttgattcacatttcacctaataataatattcttattttgtgtgtcatgcattcctca-gtccaaaatgttcagagcaaagaaacagagatgattaaacaaagaattattttatgttgtagatatggaagagaag
      |||||||| |||||||| | |||||| ||||| ||||||||||| ||||||||  | || || || || |||||||| ||||| || ||||| ||||    | ||  ||| |    ||    ||||||  ||  | ||  ||  | |  | |||  |  |    ||  |||||    |       |||    | |||                                        
------ATGTTGCATAGAGCAGCAACCAATGCATATTCGTGGTGGTGGGCCAGCCACATCAGGACTAAGCAGTCTAAATGGCTTGAACAAAACCTTCATGgtaatgctattccttctc-caccatgccataataccatgataatgctgattttggttcatctcctacaatcaccatgtt--atgttcttttacatttgttatt----------------------------------------