1 5' 3' | 2 5' 3' | 3 5' 3' |
TAAAAGTCATGGTAACAAAGATTTTAGCATCAACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAGgtcagctctccatatttccaagcctctgagacaattaaattacttacaagatcacatcttagagtaggttagtctctaaactgacactcgataatgtcttcaattgtgtag
species | Arabidopsis thaliana |
transcript | AT1G57620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAG GGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCATEST: gi|86076995|gb|DR372752.1|DR372752
genomic: GAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAGgtcagctctc ... aattgtgtagGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCAT
EST: GAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAG GGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCATEST: gi|164084630|gb|ES041804.1|ES041804
genomic: GAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAGgtcagctctc ... aattgtgtagGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCAT
EST: GAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAG GGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTG
genomic: GAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAGgtcagctctc ... aattgtgtagGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAAGTCATGGTAACAAAGATTTTAGCATCAACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAAAGATCGAGgtcagctctccatatttccaagcctctgagacaattaaattacttacaagatcacatcttagagtaggttagtctctaaactgacactcgataatgtcttcaattgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA