Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAAACATCCTTCAGGGATTGTTCCTACTCTTCAgtgagttctctcttttgtgtctctgttttaagattctgagtttgtgcttttgtgaatcacaagatcttacctttttcttttttggtttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G55520.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874591|gb|AU235422.1|AU235422
EST:     CAGCCAGTTGACCTTACTAAACATCCTTCAGGGATTGTTCCTACTCTTCA                         AAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCAT
genomic: CAGCCAGTTGACCTTACTAAACATCCTTCAGGGATTGTTCCTACTCTTCAgtgagttctc ... tttgtttcagAAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCAT
EST: gi|47831853|gb|CK121537.1|CK121537
EST:     CAGCCAGTTGACCTTACTAAACATCCTTCAGGGATTGTTCCTACTCTTCA                         AAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCAT
genomic: CAGCCAGTTGACCTTACTAAACATCCTTCAGGGATTGTTCCTACTCTTCAgtgagttctc ... tttgtttcagAAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCAT