1 5' 3' | 2 5' 3' | 3 5' 3' |
CGACGAGTTCCCGGCTTCTCTGCTTGATCTCCCTGCAGTTGTTGAGTCTTTTAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGgtaaaatcaagttacttgattcatcttttacttatatgcgttaacttctgtaattttggactaaaactcaatatggatgctttgatttggcacacag
species | Arabidopsis thaliana |
transcript | AT1G55300.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGCATTAGTCAAAACTGCTGATATTGGGCAG ATGATCATGGTTAGGGAGCCTGGTGATCCTGCGCCTAATACAGEST: gi|124944626|gb|EL020709.1|EL020709
genomic: GTGCATTAGTCAAAACTGCTGATATTGGGCAGgtaaaatcaa ... tggcacacagATGATCATGGTTAGGGAGCCTGGTGATCCTGCGCCTAATACAG
EST: TCAAAACTGCTGATATTGGGCAG ATGATCATGGTTAGGGAGCCTGGTGATCCTGCGCCTAATACAGTTGAATACEST: gi|124763769|gb|EH853899.1|EH853899
genomic: TCAAAACTGCTGATATTGGGCAGgtaaaatcaa ... tggcacacagATGATCATGGTTAGGGAGCCTGGTGATCCTGCGCCTAATACAGTTGAATAC
EST: TTAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTAGGCAG ATGATCATGGTTAGGGAGCCT
genomic: TTAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGgtaaaatcaa ... tggcacacagATGATCATGGTTAGGGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGAGTTCCCGGCTTCTCTGCTTGATCTCCCTGCAGTTGTTGAGTCTTTTAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGgtaaaatcaagttacttgattcatcttttacttatatgcgttaacttctgtaattttggactaaaactcaatatggatgctttgatttggcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT