1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGGAGCCTTTACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttttatttcaattggtttttctttctttctttcgcctttggtataatgcagagtttcaatttgtaattgttcttttatgttttgcag
species | Arabidopsis thaliana |
transcript | AT1G54080.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGT GTATGCTGGAAACATTCATACGCAEST: gi|125055193|gb|EL125537.1|EL125537
genomic: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttt ... tgttttgcagGTATGCTGGAAACATTCATACGCA
EST: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGT GTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATEST: gi|125104975|gb|EL158892.1|EL158892
genomic: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttt ... tgttttgcagGTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGAT
EST: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGT GTATGCTGGAAACATTCATACGCAGGTCACAGAGATTEST: gi|124882852|gb|EH961754.1|EH961754
genomic: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttt ... tgttttgcagGTATGCTGGAAACATTCATACGCAGGTCACAGAGATT
EST: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGT GTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATEST: gi|125269206|gb|EL283291.1|EL283291
genomic: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttt ... tgttttgcagGTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGAT
EST: ATCCAACTACTTGCCGTAGTGT GTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGATEST: gi|125227260|gb|EL241345.1|EL241345
genomic: ATCCAACTACTTGCCGTAGTGTgtgagttttt ... tgttttgcagGTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGAT
EST: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGT GTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAGTA
genomic: CCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttt ... tgttttgcagGTATGCTGGAAACATTCATACGCAGGTCACAGAGATTCTTCTTCAAGAG-A
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAGCCTTTACCAAGTGGAAACCTTCCTCCTGGTTTTGATCCAACTACTTGCCGTAGTGTgtgagttttttatttcaattggtttttctttctttctttcgcctttggtataatgcagagtttcaatttgtaattgttcttttatgttttgcag
- - - - - - - AGTGGA