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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgtagtagctttttctcgttttttgtcaatctgtgtcaaagtttgtcaattgcatagtttctaattcttgtgtgtgagcag

Basic information

species Arabidopsis thaliana
transcript AT1G53140.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 2
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgtagtagctttttctcgttttttgtcaatct--gtgtcaaagtttgtca-attgcatagtttctaattcttgtgtgtgagcag
 || || || ||||| || || ||||| ||||| ||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |||||||| |||||   |||||    |   |     | |   |  |  |  | | |||    |||| ||   |   || |  | ||     ||||
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagcttgaaatttatgacaattaggtttggcatttatgcttgctggattgtattcatggaaacttatttggtactgcag

upper sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G36650.1 (Glycine max), 5'ss of exon 2
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgtagtagctttttctcgttttttgtcaatctgtgtcaaagtttgtcaattgcatagtttctaattcttgtgtgtgagcag----------------
 || || || ||||| || || ||||| ||||| ||||||||||||||||| |||||||| || || ||||| ||||| || ||||| |||||||| |||||   || || |  |   |        ||  ||||    ||||| || |||     || ||   |  | |   ||   |                 
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagtttgtaatttatgacaagtgataagtgttg--gtttggcatttgtgc--ttgctggattgtattcatggaaactcatttggtactgcag

upper sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv19s0014g02500.t01 (Vitis vinifera), 5'ss of exon 3
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgta----gtagctttttctcgttttttgtcaatctgt-gtcaaagtttgtcaattgcatagtttctaattcttgtgtgtgagcag----------------------
||| |||||||| || ||  | || || ||||| |||||||| || |||||||||||||| ||||| || || |||||||| || ||||| ||||| ||||||     |      |    | |  |  | ||  ||  ||  ||   | |||    ||||   | |  |  |||         |                       
GACTAAAACTGCCGTTTCTTCTAAACCAATTGTAATGAGAGCAGAATATGCTCATTGTCCTAATCTCACCATTATTGATACCCCGGGTTTCGTTCTTAAGgtacattatcaaggatcaaagataatgatgaacatgaagttcaaaactttcaccaacata---tttggtctttgcactaagataaatatttgaaactgcattggcag

upper sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S202_11V6.1 (Physcomitrella patens), 5'ss of exon 2
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgta--gtagctttttctcgttt--tttgtcaatctgtg-----tcaaagt----ttgtcaattgcatagtttctaattcttgtgtgtgagcag--------
   | |||| |||||     | ||||| ||||||||| |||| ||||| || |  ||||| || || || ||||||||||| | ||||||| |||||||||||  | |  | ||   | | |  | |||     || |     |  ||||    ||     | | ||| | |||    | | ||| ||| |          
ATTGGAAACGGCAGTAAGTTCGAAGCCAATTGTGATGCGAGCGGAGTACGCACTCTGTCCCAACCTTACAATCATTGATACCCTTGGTTTTATTCTCAAGgtacagcaattcttaaccatctggtctgttttcttgggaggaatagaagtctcatttctggtagaatattatcttgaacat-tgtttgatcccgtgatttt

upper sequence: AT1G53140.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ18064 (Selaginella moellendorffii), 5'ss of exon 2
GACGAAAACTGCAGTCTCGCCAAAGCCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCTGGTTTTGTTCTCAAGgtagtagctttttctcgttttttgtcaatctgtgtcaaagtttgtcaattgcatagtttctaattcttgtgtgtgagcag
||      | ||||||    | ||||| ||||||||| | |  ||||||||  ||||||| ||||| || ||||| ||||| || |||||| ||||||||||||    | |  || || ||      |   ||       ||| |  |||      |||||| || |  | ||  ||   
GATCCGTGCGGCAGTCAGCTCCAAGCCAATTGTGATGCGTGTGGAGTATGCGTATTGTCCCAATCTCACCATCATCGATACACCGGGTTTTATTCTCAAGgtagcgcttctaactagtgtt------actagtcctccgttttatacatt------tttctacttttcatatggcag---