1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCGGCTGAGCTAGAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCgtaagttcaaatttttaaccgttgttcgttttgcagtcgctaattgaattgcgccaaaatatgttgttgaaccaacaactacaaaacggacattgtttga...
species | Arabidopsis thaliana |
transcript | AT1G51680.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTACTGATGTTGCTGTTGTCGC AATGAAAGAAGAAGCAGCTGGTGAAGTTCCTGTTGCATTTGTGGTGAAATCEST: gi|125110458|gb|EL162408.1|EL162408
genomic: TTACTGATGTTGCTGTTGTCGCgtaagttcaa ... gattaaacagAATGAAAGAAGAAGCAGCTGGTGAAGTTCCTGTTGCATTTGTGGTGAAATC
EST: TCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGC AATGAAAGAAGAAGCAGCTGGTGAAGTTCCTGTTGCATTTGTGGTGEST: gi|125157705|gb|EL186647.1|EL186647
genomic: TCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCgtaagttcaa ... gattaaacagAATGAAAGAAGAAGCAGCTGGTGAAGTTCCTGTTGCATTTGTGGTG
EST: GAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGC AATGAAAGAAGAAGCAGEST: gi|125054325|gb|EL125093.1|EL125093
genomic: GAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCgtaagttcaa ... gattaaacagAATGAAAGAAGAAGCAG
EST: GAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGC AATGAAAGAAAGAAGCAGCTGGTGAAGTTCCTGTTG
genomic: GAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCgtaagttcaa ... gattaaacagAATGAAAGAA-GAAGCAGCTGGTGAAGTTCCTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAGAACTTATCAAGTATAAAGGTTTTCAGGTAGCTCCGGCTGAGCTAGAGGCTTTGCTCATCGGTCATCCTGACATTACTGATGTTGCTGTTGTCGCgtaagttcaaatttttaaccgttgttcgttttgcagtcgctaattgaattgcgccaaaatatgttgttgaaccaacaactacaaaacggacattgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaac