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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGACTACTTCGCTTGTTCGAGAAGCGAATGCCAAGTTTCATCAGGGCTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGgttagttagtgtgttagtttagctttcatgatgaaacagaaaactttgtcttattgactgttgttattaatcctctggtttatggaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G49670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072169|gb|DR367926.1|DR367926
EST:     CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAG                         GAGATCTCCTCGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTG
genomic: CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGgttagttagt ... atggaaacagGAGATCTCCTCGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTG
EST: gi|124906140|gb|EH980220.1|EH980220
EST:     CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAG                         GAGATCTCCTCGCTGCTTTCGATAAGCATTTAGCCA
genomic: CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGgttagttagt ... atggaaacagGAGATCTCCTCGCTGCTTTCGATAAGCATTTAGCCA
EST: gi|86072168|gb|DR367925.1|DR367925
EST:     CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGAATAATAGAG                         GAGATCTCCTCGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTG
genomic: CTTAAGCTTTCCTTCTGCTATCTTTGTGAAATGTGATGTGACTAATAGAGgttagttagt ... atggaaacagGAGATCTCCTCGCTGCTTTCGATAAGCATTTAGCCACATTTGGAACACTTG