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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGAATCACATGGAGGAGGAGTTGGTTGTATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGgtattttgaggaagaagaaagctcttactatataatatgatcgtttgatttacatgttggtttgctttattag

Basic information

species Arabidopsis thaliana
transcript AT1G48850.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 2
TTGGAGAATCACATGGAGGAGGAGTTGGTTGTATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGgtattttgaggaagaagaaagctcttactatataatatgatcgtttgatttacatgttggtttgctttattag----------------------------
 ||| ||||||||||||||||| ||||||||| | |||||||| |||||||||||  |||| ||  ||||| ||||| ||||| | ||||| || ||||||| ||| |     |||   | |||||  | |  | |    |  ||  |||              ||||    |                            
ATGGGGAATCACATGGAGGAGGTGTTGGTTGTGTTATTGATGGATGTCCTCCTCGCCTTCCTCTCTCTGAAGCTGATATGCAAGTGGATCTTGACAGAAGgtgttt-gcctctgaaatcatctctttatcttcattgaactacttgtattgtgggagaaaaacactttggacgttgaagagaaatactttataggatagtt

upper sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 2
TTGGAGAATCACATGGAGGAGGAGTTGGTTGTATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGgtattttgaggaagaagaaagctcttactatataatatgatcgtttgatttacatgttggtttgctttattag-----------------------------
 ||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||   |||| ||  | ||| ||||| ||||||| ||||| || |||||||  || |   | |||   | |||||  | |  | |   |  | |||  ||    | |        ||   ||                             
ATGGAGAATCGCATGGAGGAGGTGTTGGTTGTATTATTGATGGATGTCCTCCTCACCTTCCTCTCTCCGAAGCTGATATGCAATTGGATCTTGACAGAAGgtgctt-gcctatgaaatcatctctttatcttcattg-aactgcttgcattgtgggataaaaacacttgggaggttgaagagaaatactttataggatagtt

upper sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 2
TTGGAGAATCACATGGAGGAGGAGTTGGTTGTATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGgtat--------tttgaggaaga---agaaagctcttactatataatatgatcgtttgatttacatgttggtttgctttattag------------
  |||||||| | ||| || || |||||||| || |||||||| ||||||||||| ||||| ||  | ||| ||||| | ||| |||| ||||| |||||||||        ||     |  |   |   | |   | |  ||||| |||||  |  ||         | | |   |  | ||             
ACGGAGAATCTCGTGGTGGCGGTGTTGGTTGCATTATTGATGGATGTCCTCCTCGGATTCCCCTCTCAGAAGCTGATGTTCAAGTCGAACTCGACAGAAGgtatgaactgtgttcatatatcatctaattaacatgtgccttataa-atgatgctaagagagttgaactagatatttcaactaatgtgatgatcag

upper sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 2
TTGGAGAATCACATGGAGGAGGAGTTGGTTGTATCATTGATGGTTGTCCTCCTCGTATTCCACTTACTGAATCTGATTTGCAATTCGATCTCGATAGAAGgtattttgagg--aagaagaaagctcttact-----atataatatgatcgtttgatttacatgttggtttgctttattag--------------------
 ||||||||| |||||||| || |||||||| || |||||||| |||||||||||  |||| || || ||  ||||| ||||| | ||||| |||||||||||  |       ||| |    ||| | |||     ||  ||    ||| || | || |  |     ||||  |  ||                      
ATGGAGAATCTCATGGAGGTGGTGTTGGTTGCATAATTGATGGATGTCCTCCTCGCCTTCCCCTCACAGAGGCTGATATGCAAATAGATCTTGATAGAAGgtaactgacttttaaggacttggctttgacttagagatggaagtctatccttggtttcatgttagaatttgtctggtttttgatcaatgaatgtttaaac