Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGTTAAAGCAATGTATACCTCCGAGGCAGCCCCTGATTTTGTTGTTGACCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAGgtaattataacttggattccttgtatcaattatactctcggccttaatgcgacaagttctctaattttcttaagtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G48110.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428293|gb|EG470885.1|EG470885
EST:     CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAG                         GTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
genomic: CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAGgtaattataa ... taagtttcagGTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
EST: gi|116434950|gb|EG477542.1|EG477542
EST:     CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAG                         GTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
genomic: CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAGgtaattataa ... taagtttcagGTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
EST: gi|116403222|gb|EG445814.1|EG445814
EST:     CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAG                         GTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
genomic: CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAGgtaattataa ... taagtttcagGTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
EST: gi|116437119|gb|EG479711.1|EG479711
EST:     CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAG                         GTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG
genomic: CCAGGGCATGTATTACCCCGTTGATGCCAGTTATGGCTATTACTGTACAGgtaattataa ... taagtttcagGTTATGAGTCACCCGGTGATTGGGAGAACCATCAGATGTTTTTTGGTGTAG