Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGGCAACTCTACACACTGTGGATTCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTGgtaaaatgataaatttagttttacattaagaatgatgaaataatgcatcaatagtgacaattattattgatactaattttgtgtcttgctaagttgctattactaaatcttgtactcttgattggaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G47670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G07440.1 (Glycine max), 5'ss of exon 2
TGCTGGCAACTCTACACACTGTGGATTCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTGgtaaaatgataaat-------ttagttttacattaagaatgatgaaataatgcatcaatagtgacaattattattgatactaattttgtgtcttgctaagttgctattactaaatcttgtactcttgattggaacag
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TGTTGGCAACTTTACACGTTATGGATTCTGGTTCAGCTTCACGAAGCAGTTCCAGGTAAAAGATACAACAGATATGTGGAGCTAGCACAAGCAGCATTTGgtaagcttgtctttccctcgattactttttctagcaagttgatgtaacatagttaaaaaaaggctaatta--attaacaatgctgaaatgttttgtagcata-----------------------------------
upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ25828 (Selaginella moellendorffii), 5'ss of exon 2
TGCTGGCAACTCTACACACTGTGGATTCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTGgtaaaatgataaatttagttttacattaagaatgatgaaataatgcatcaatagtgacaattattattgatactaattttgtgtcttgctaagttgctattactaaatcttgtactcttgattggaacag
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ATTTGGCAGCTCTACACACTCTGGATCCTCATCCAGCTACACGAAGCTGTCCCTGGCAAACGCCACAGTCGATACGTCGAGCTCGCTCAAGAAGCTTTTGgtaaactt-tgaaactaactctagaactttgctcacgaaaaagtatctccatgctttttctttcag----------------------------------------------------------------
upper sequence: AT1G47670.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ05291 (Selaginella moellendorffii), 5'ss of exon 2
TGCTGGCAACTCTACACACTGTGGATTCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTGgtaaaatgataaatttagttttacattaagaatgatgaaataatgcatcaatagtgacaattattattgatactaattttgtgtcttgctaagttgctattactaaatcttgtactcttgattggaacag
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ATTTGGCAGCTCTACACACTCTGGATCCTCATCCAGCTACACGAAGCTGTCCCTGGCAAACGCCACAGTCGATACGTCGAGCTCGCTCAAGAAGCTTTTGgtaaactt-tgaaactaactctagagctttgctcacaaaaaagtatctccatgctttttcttccag----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125033681|gb|EL105950.1|EL105950EST: CCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTG GAGAAAAGGTTAAGGAGTATGGCTTGCATTGTTTCCTACGGTTTA
genomic: CCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTGgtaaaatgat ... attggaacagGAGAAA-GGTTA-GGAGTATGGCTTGCATTGTTTCCTACGGTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGGCAACTCTACACACTGTGGATTCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGCACAAGCTGCTTTTGgtaaaatgataaatttagttttacattaagaatgatgaaataatgcatcaatagtgacaattattattgatactaattttgtgtcttgctaagttgctattactaaatcttgtactcttgattggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT