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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGTCAAGATCTTCTTACCATTATGATTCTTCATGACAAGgtttgtttctacattgatctcttttgaacttgtttatgtctagttagttggtaaagttgtgttttatcgagttgtagttaaggacatagctataatatgc...

Basic information

species Arabidopsis thaliana
transcript AT1G44446.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 2
AGATGTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGTCAAGATCTTCTTACCATTATGATTCTTCATGACAAGgtttgtttctacattgatctcttttgaacttgt---ttatgtctagttagttggtaaa------gttgtgttttatc-----gagttgtagttaaggacatagct-ataatatgc--------------------------------------------------------------------------------
 |||||  |||||||  |||||||||| || | ||||||||||||||  |||||||| ||| | |||||  | |||||||| ||| |||||||||| ||||||||  | |  ||   |   || ||   |||    | || | |  | | | | | ||       |  |||||  ||     || || |  |||       |  | || ||||                                                                                  
GGATGTATATCAAGCCCTTGAAGTTGCAAGATATGATATTCAATACTGTGATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAGgtttgaatttgtatcacttaattatgtgtttgagaatcatatttgatcattcgatgaattttgtatcatgtttggtctatatgaattttgattatttgtccatttgatcatattattgtttcgccatagccttttcacttcagctacacatgccactagatggtaaatttattcctccaaaaattatgggtgtag

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G11920.1 (Glycine max), 5'ss of exon 2
AGATGTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGTCAAGATCTTCTTACCATTATGATTCTTCATGACAAGgtttgtttctacattgatctcttttgaacttgtttatgtctagtta--gttggtaaagttgtgttttatcgagttgtagttaaggacat--agctataatatgc-----------------------------------------------------------------------------
 |||||  |||||||  ||||| |||| || | ||||||||||||||  |||||||| ||||| |||||  | ||| |||| ||| |||| ||||| ||||||||  | || | | || | |  | |     |  || |    | |   |||||  |  |   ||||    | || ||     || |||      ||| |||||                                                                             
GGATGTATATCAAGCCCTTGAATTTGCAAGATATGATATTCAATACTGTGATTGGCGAGCTCGCCAAGACTTGCTTGCCATCATGCTTCTCCATGAAAAGgtttgaatttagaattatatttgatcattcgatgaatttggtatcatgtttggtctatataaattttgaatatttataaacttgggcattggatcatattatgctttcaccatagccttttcaattcagccgcacatgccactatatggtaaatttatttctccaaaaattatgggtgtag

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 1
AGATGTTAATCAAGCTATTGAAGTTGCTAGGTTTGATATTCAATACTTGGATTGGCGTGCTCGTCAAGATCTTCTTACCATTATGATTCTTCATGACAAGgtttgtttctacatt--gatctcttttgaacttgtttatgtctagttagttggtaaagttgtgttttatcgagttgtagttaaggacatagctata-atatgc------------------------------------------------------------------------------------
 ||||| ||||||||| ||||||| ||||| ||||||||||| ||||  |||||||| ||||| |||||||| ||||| || ||| | || ||||| |||||    |  |   ||     |||  ||  | |   |  | | || ||  ||    ||  | ||| || ||   |||   ||  |    ||| | || | ||                                                                                      
GGATGTAAATCAAGCTCTTGAAGTAGCTAGATTTGATATTCAGTACTGTGATTGGCGGGCTCGGCAAGATCTGCTTACAATCATGCTCCTCCATGAAAAGgtcccctcttgttttctatcctccattttattcactagtttttatttgattttctaatgtctgtctt-tccctttgattttttgtttgtagttctataaatataaacattgagtctgattttttgttttatacattgaaattttttgaatttattggggaattctgaattgaatgatgtgggcgtag