1 5' 3' | 2 5' 3' | 3 5' 3' |
GAAAGAGAGGAAGATTAGGTATACTGGTGAGTTAGAGAGGAAGGTTCAGACACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAGgtaatgttttgtattactttgtcattgtgtttatgcaattggtgtgactagtgaaggttggtgagtagattactaaatatctttaaagctttgtgtttta...
species | Arabidopsis thaliana |
transcript | AT1G43700.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAG AGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTTEST: gi|86077218|gb|DR372975.1|DR372975
genomic: CACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAGgtaatgtttt ... tattgtgtagAGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTT
EST: CACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAG AGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTTEST: gi|116429603|gb|EG472195.1|EG472195
genomic: CACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAGgtaatgtttt ... tattgtgtagAGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTT
EST: CACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAG AGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTT
genomic: CACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAGgtaatgtttt ... tattgtgtagAGAGGAACATCAGAGCTGAACACTGAAAATAAACACCTCAAAATGCGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGAGAGGAAGATTAGGTATACTGGTGAGTTAGAGAGGAAGGTTCAGACACTTCAGAATGAAGCTACTACATTGTCTGCTCAAGTCACTATGTTACAGgtaatgttttgtattactttgtcattgtgtttatgcaattggtgtgactagtgaaggttggtgagtagattactaaatatctttaaagctttgtgtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC