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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTAATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagattaaaaataaaaccttctcttgattgtgtttaacccttttatgttttggtgttaagtttaacagtttcttctttgtttatcag

Basic information

species Arabidopsis thaliana
transcript AT1G43190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G43190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 1
--GTTTTGTAATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgta----aagattaaaaataaaaccttctcttgattgtgtttaaccctt---ttatgttttggtgttaag--tttaacagtttcttctttgtttatcag--
    |||  |||| ||||  ||||||||||| |||||||||||||||| || ||||| || || || |||    |   ||  |||| |||   |||||  ||| | | ||  | |    | || |     |||| |   |||  ||||  | |       ||||    
GTTATTTAAAATGACGGAGCCTTCCAAAGTCATTCATGTTCGTAATGTGGGGCATGAAATATCAGAGgtatgttattctttcaaatcaaatgatctctatatt-tatatatgcttggaatcatttccatatgttgaacatttctcagtagcatacactcatatctagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125223487|gb|EL237572.1|EL237572
EST:     AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA                         AATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAG
genomic: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagatta ... tgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAG
EST: gi|124929761|gb|EL007278.1|EL007278
EST:     AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA                         AATGATTTGCTTCA
genomic: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagatta ... tgtttatcagAATGATTTGCTTCA
EST: gi|124768152|gb|EH858282.1|EH858282
EST:     AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA                         AATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACT
genomic: AATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAgtaaagatta ... tgtttatcagAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACT