Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTATCTTCATACAGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACgtaatgttacttaatagtgattttgacttggtttgtgcttatatttgattagagatgtctgataagtttcattgatgatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G36050.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125313363|gb|EL327448.1|EL327448
EST:     CTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAAC                         TTTGATATTACGTT-CCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCT
genomic: CTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACgtaatgttac ... gatgatgcagTTTGATATTACGTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCT