Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCTTTAAGAAGGTCAATGGTCTTCTTCCGTGGTCAACCTGTTGGTACTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactatcgaaaagttttcatggttttatctcaaaacgtttcaaaatgttttttttgcggttgttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G35580.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164228931|gb|EL974720.1|EL974720
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125187566|gb|EL202520.1|EL202520
EST:     CGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|116454993|gb|EG497585.1|EG497585
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125176470|gb|EL195771.1|EL195771
EST:     AACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: AACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125282304|gb|EL296389.1|EL296389
EST:     ACTACCGATGAAGTCTTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: ACTACCGATGAAGTC-TTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|164219974|gb|EL992881.1|EL992881
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAA
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAA
EST: gi|124798100|gb|EH887779.1|EH887779
EST:     ACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: ACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|124873801|gb|EH955446.1|EH955446
EST:     CTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|116454994|gb|EG497586.1|EG497586
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125254486|gb|EL268571.1|EL268571
EST:     ACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: ACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125180479|gb|EL197422.1|EL197422
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGNTTTTGTACCGAGTGCGTTGGCGTTT
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTT
EST: gi|124789737|gb|EH879416.1|EH879416
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGG
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGG
EST: gi|124814219|gb|EH899085.1|EH899085
EST:     ATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: ATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125071502|gb|EL136529.1|EL136529
EST:     ACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: ACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|125260087|gb|EL274172.1|EL274172
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAG
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAG
EST: gi|125161396|gb|EL188535.1|EL188535
EST:     ACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: ACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
EST: gi|116437905|gb|EG480497.1|EG480497
EST:     CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAG                         GTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA
genomic: CTCTTGCCGCGGTTGATAATACTACCGATGAAGTCTTGAACTATGATCAGgtaaaactat ... gttgttgtagGTGTTTGTGAGGGATTTTGTACCGAGTGCGTTGGCGTTTCTGATGAATGGA