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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTTTAGAAGAAAAGATGAAAGTGTTGAGAAACGAAAAGCATCGAGGCTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtcacctcttgcttaatttcaaaggtgtttttgattgattgatattgaattaatcttttttttttggggtttag

Basic information

species Arabidopsis thaliana
transcript AT1G35190.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86031356|gb|DR327109.1|DR327109
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031354|gb|DR327107.1|DR327107
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031355|gb|DR327108.1|DR327108
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031347|gb|DR327100.1|DR327100
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031346|gb|DR327099.1|DR327099
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031353|gb|DR327106.1|DR327106
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031340|gb|DR327093.1|DR327093
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031350|gb|DR327103.1|DR327103
EST:     CTATACMCCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031335|gb|DR327088.1|DR327088
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031341|gb|DR327094.1|DR327094
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031349|gb|DR327102.1|DR327102
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|86031351|gb|DR327104.1|DR327104
EST:     CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: CTATACACCTGTTCTTGATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
EST: gi|124970149|gb|EL043998.1|EL043998
EST:     GATGAACTTTTAGATCCCAAGAATCAAATCAATG                         GGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC
genomic: GATGAACTTTTAGATCCCAAGAATCAAATCAATGgtttgtgtca ... tggggtttagGGGATCACAAAGAGGGTTATTACATTGGAATTGAAGTTCCTAAAGATGATC