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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagtgtctctctgcttatacctgacctgaccaatgttctttgtttagcttatttaatctctgtttgttgttgcttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G34210.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 2
TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagtgtctctctgcttatacctgacctgaccaatgttctttgtttagcttatttaatctctgtttgttgttgcttcttcag
||||||| ||||||||  | ||||| ||||| || || || || |||||||| ||||||||||| || || || || ||||| ||||||||||| |||||||  |||   |  |   | |||   |    | | | |     |   |   ||||| ||  | | |   || ||          
TTGATCCTAATAATGTTCTACAAAGTTGGGACCCAACTCTGGTCAATCCGTGCACTTGGTTTCATGTTACTTGCAATAACGACAACAGTGTTATCAGAGTgtacgtgctaccttttgtctact--atgcaatccacgcctcatacatt-tttattgaaattatctccatttttcag-------

upper sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 2
TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagtgtctctct---gcttatacctgacctgaccaatgttctttgtttagcttatttaat--ctctgtttgttgttgcttcttcag
  ||| | || ||||||||||| || |||||||| || ||||||||||| ||||| ||||| || || |||||||||||||| ||||||||||| ||||||| |||   |       |||   |  |   |  | |||   | ||  |   | |    || |   |||   |||     |||   |||
AAGATGCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTTGTTAATCCATGTACATGGTTCCATGTTACGTGTAACAACGATAACAGTGTTATCAGAGTgtaagttgatgaaaaaagctctcatatattcgtatcaaaagtgttaatgatgttctcctactggttctaagtgtaccccctttcacag

upper sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagt--gtctctctgcttatacctgacctgaccaatgttctt-tgtttagcttatttaatctctgtttgttgttgcttcttcag
| ||| | || ||||||||||| || |||||| | || ||||||||||| ||||| ||||||||||| |||||||||| ||| ||||||||||| ||||||| |||   |      |||   |  |   |    ||| ||  |  || |   ||  ||     |||   |||     |||   |||
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcgatgaaaaagctctcatatattcatttcaaagtgttagtgatgttctccttctggttctaaatgtccccactttcacag

upper sequence: AT1G34210.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 2
TTGATCCAAATAATGTCTTGCAAAGCTGGGATCCTACGCTTGTTAATCCGTGTACTTGGTTTCACGTAACGTGTAACAACGAGAACAGTGTTATAAGAGTgtgagt--gtctctctgcttatacctgacctgaccaatgttctttgtt-tagcttatttaatctctgtttgttgttgcttcttcag--------------------------------------------------
  ||||| || |||||  |||| || |||||||||||||| || || || || || |||||||| || || |||||||| || || |||||||||||||||| ||    | ||   | | ||| ||    |||   |  | |  |||| ||  || |            ||| |  | ||  |||                                                   
AAGATCCTAACAATGTGCTGCAGAGTTGGGATCCTACGCTAGTGAACCCATGCACATGGTTTCATGTCACATGTAACAATGAAAATAGTGTTATAAGAGTgtaagctaatttcctcgttgatagcttttgtgatgtacatgcaatgttgtaaattgt--ggcaaagaaatgtagaagttttatcaaattctaactggtgtctcacatgaatgagttgattttcgtgtcttcatcag