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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGACTAATGGAGATCAAAGTTACGTTTCGTTTGGGAGGCCTATTCTTATGGCTGTGTCACTGTCTTCTAATATCTTTGACAATCTTCCCAAAGCGTGgtatgtgattatcgtcttttactttatatattgggttcaaaaacagagtcttggtttgttgcacttctttagttcttatgttctttgattttgttttatcatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G32400.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124891085|gb|EH969987.1|EH969987
EST:     TCCCAAAGCGTG                         GTTCATATACTTGTTCATTGGTATTGGTGT
genomic: TCCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGT
EST: gi|125270361|gb|EL284446.1|EL284446
EST:     CCCAAAGCGTG                         GTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG
genomic: CCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG
EST: gi|124747789|gb|EH837919.1|EH837919
EST:     TCCCAAAGCGTG                         GTTCATATACTTGTTCATTGGTATTGGT
genomic: TCCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGT
EST: gi|125276558|gb|EL290643.1|EL290643
EST:     CCCAAAGCGTG                         GTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG
genomic: CCCAAAGCGTGgtatgtgatt ... tatcatgcagGTTCATATACTTGTTCATTGGTATTGGTGTGGCTCTCTTTGTTATTTCTTG