1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTTGCTTTGCCGCCTACTTCGCCGGAAACTTGTCTCAGATGGTAACTTTACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGgtaaaattttcaaactcttttttaactctttgtggttatataccttttaagactttaaattagatcaagcccatctaaaccaatcaatttaaaccgttttatatttgtag
species | Arabidopsis thaliana |
transcript | AT1G32100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATATTTATGGTGATGGAAATGTAAAAG TGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAAEST: gi|86079297|gb|DR375054.1|DR375054
genomic: ATATTTATGGTGATGGAAATGTAAAAGgtaaaatttt ... atatttgtagTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA
EST: ACTTCCTCCGAAAGAWAAAGTTAATATTTATGGTGATGGAAATGTAAAAG TGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA
genomic: ACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGgtaaaatttt ... atatttgtagTGGTGTTTGCGGATGAAGATGATATCGCAAAATACACCGCGAAAACGTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGCTTTGCCGCCTACTTCGCCGGAAACTTGTCTCAGATGGTAACTTTACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGgtaaaattttcaaactcttttttaactctttgtggttatataccttttaagactttaaattagatcaagcccatctaaaccaatcaatttaaaccgttttatatttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA