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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTTAGTCGATCAAGATCTACCTTATGGACTAAGGGAGAGACATCCAATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgcgtggaccacagatatgaatcaatgcagtgttattcttcataaactcattggtctctattttctcag

Basic information

species Arabidopsis thaliana
transcript AT1G31860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31860.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G05140.1 (Glycine max), 5'ss of exon 4
ATTCTTTAGTCGATCAAGATCTACCTTATGGACTAAGGGAGAGACATCCAATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatg---tttgcgtggaccacag-atatgaatcaatgcagtgttattctt-------cataaact-cattggtctctattttctcag-----------------
||||| ||| |||||| ||||||| || ||||| || ||||| || || ||||| || |||||| |||  ||||| | | ||||||||||||||||||| ||| |   ||    |    | ||    || | | |||      || | |||       || ||  |   ||| |  || ||||||| |                 
ATTCTATAGCCGATCACGATCTACATTGTGGACCAAAGGAGAAACCTCTAATAATTTTATCAATGTTCACGATGTCTTTATTGATTGTGATCGTGATTCTgtaagcacttcctttttttctcattggattatttaatttttccttttccttttggtatcacaaggtatgttgattact-ttttctctgttaactactcttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164016206|gb|EL989992.1|EL989992
EST:     GATCGTGATTCG                         ATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAG
genomic: GATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAG
EST: gi|86029619|gb|DR325372.1|DR325372
EST:     ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCG                         ATTATTTACCTTGGGAACACCTGATGGACCTA
genomic: ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTTGG-AACACCTGATGGACCTA
EST: gi|86029612|gb|DR325365.1|DR325365
EST:     ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCG                         ATTATTTACCTTG
genomic: ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTTG
EST: gi|86029611|gb|DR325364.1|DR325364
EST:     ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCG                         ATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAG
genomic: ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAG
EST: gi|86029615|gb|DR325368.1|DR325368
EST:     ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCG                         ATTATTTACCTT
genomic: ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTT
EST: gi|86029616|gb|DR325369.1|DR325369
EST:     ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCG                         ATTATTTACCTTGGAACACCTGATGGACCTAC-TGTCACA
genomic: ATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACA
EST: gi|86078213|gb|DR373970.1|DR373970
EST:     ATTCTTGATGTGTATGTTGATTGTGATCGTGATTCG                         ATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAG
genomic: ATTCTTGATGTGTATGTTGATTGTGATCGTGATTCGgtatgtttgc ... attttctcagATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAG