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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGGGCATCTGTGAGATGAAAAGCTGCTGCTCATGGCTTCTTTTGATCTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACGgtacgtcgatatgaatcaactattactattcatagcgtcctggaccttttattgagctttaatcctttattgcttgtttccattcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G31420.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116452754|gb|EG495346.1|EG495346
EST:     CTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACG                         GCGAGGCGCTTCTGAGCTTCAGAAATGCAGTTACTAGATCAGATAGTTTCA
genomic: CTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACGgtacgtcgat ... cattcttcagGCGAGGCGCTTCTGAGCTTCAGAAATGCAGTTACTAGATCAGATAGTTTCA
EST: gi|125223249|gb|EL237334.1|EL237334
EST:     AGTCAAGCGATTAGTCCTGACG                         GCGAGGCGCTTCTGAGCTTCAGAAATGCAGTTA
genomic: AGTCAAGCGATTAGTCCTGACGgtacgtcgat ... cattcttcagGCGAGGCGCTTCTGAGCTTCAGAAATGCAGTTA
EST: gi|125231644|gb|EL245729.1|EL245729
EST:     CTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACG                         GCGAGGCGCTTCT
genomic: CTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACGgtacgtcgat ... cattcttcagGCGAGGCGCTTCT
EST: gi|116419338|gb|EG461930.1|EG461930
EST:     CTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACG                         GCGAGGCGCTTCTGAGCTTCAGAAATGCAGTTACTAGATCAGATAGTTTCA
genomic: CTCGTTGCTTTGCTCACTATCTAATGAAAGTCAAGCGATTAGTCCTGACGgtacgtcgat ... cattcttcagGCGAGGCGCTTCTGAGCTTCAGAAATGCAGTTACTAGATCAGATAGTTTCA