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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaagtccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgtatttgttctttaagagttctctgttgttagagagtgactggtgaaatctctgtgttgtgtcttag

Basic information

species Arabidopsis thaliana
transcript AT1G30490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G13110.1 (Glycine max), 5'ss of exon 2
TGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaagtccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgtatttgttctttaagagttctctgttgttagagagtgactggtgaaatctctgtgttgtgtcttag
||| ||||||||| | |||||||||||||| || ||  |||||||||| |||||  | ||||||||||| ||||||||||||||||| | ||| || ||||| |||| |  | |  | ||    |  | |||||  || |  | || |    |  ||| | |    | |||  ||||   |||   |                                           
TGCAATGAACAAGTTGTTGATGGAAGAGAACGACCGACTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATTCATGAAACAACAAATACATACTgtgagtc-tcaattatcattctgaatgttcattgaagaat-ataatttagtgttattgaaga-acctatgtcatttactggtttcttaacag--------------------------------------

upper sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G30000.1 (Glycine max), 5'ss of exon 2
TGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaagtccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgta----tttgttctt---------taagagttctctgttgttagagagtgactggtgaaatctctgtgttg-tgtcttag---
| | ||||||||| | || ||||||||||| || ||  |||||||||| |||||  | ||||||||||| ||||||||||||||||| | ||| || ||||| |||   | ||  |||||    || |||  |  | | || | ||  |  ||| |  |   ||||    | | |   |         || | ||  | |  | ||  |  || | ||  |||     | |  || | |||||    
TTCAATGAACAAGTTGTTAATGGAAGAGAACGACCGACTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATTCATGAAACAACAAATACATACTgtgagtaacttaa--cctttgagcaattgctcttctcaattatcattctgaatgttcattggtgtaccattctatctatatacaagaatatgtgtagtgtactattttattgttattgaagaatctcatttactggtttcttaacag

upper sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G02750.1 (Glycine max), 5'ss of exon 2
TGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaagtccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgtatttgttctttaagagttctctgttgttagagagtgactggtgaaatctctgtgttgtgtcttag
||| |||||||||||||| ||||| || ||||| |||||||||||||| || ||  |  |||||||||||||||| | |||||| || |  || |||||||| || | ||   | |  |||  |       ||||  |  || | | | || |  || || || || |  |  || ||   |  | || | ||  |   |||   |                        
TGCAATGAACAAGCTTTTAATGGAGGAAAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTTTATGAGAATGGTTACATGAAGCAACAGATACACACTgtgagcctttc--ttctctttatt-------ttgtgaa--tgctttttgtgtttttttta-atataataatgattcaaccatgttttggt-ttgaactttgaacag------------------------

upper sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 2
TGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaagtccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgtatttgttctttaagagttctctgttgttagagagtgactggtgaaatctctgtgttgtgtcttag
||| ||||||||||| || ||||| |||||||| |||||||||||||| || ||  |  |||| ||||||||||| | |||||| || |  || |||||||| |     |  ||| || |  ||   |   || |     | || |   || |  |||||| | | |   |   ||||  | |      ||||   |  |||    ||||                    
TGCAATGAACAAGCTGTTAATGGAGGAGAATGACCGTTTGCAGAAGCAGGTTTCTCATCTGGTGTATGAGAATGGTTACATGAAGCAACAGATACACACTgtgatattctctatctctctctctgtctttcttctcttcattttgtgaatgctttttgtattt-tctgaatatattaatggctgaaccatgttttggtttgaactttgaacag-----------------

upper sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 2
TGCTATGAACAAGCTTTTGATGGAAGAGAATGATCGTTTGCAGAAGCAAGTCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaag-tccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgtatttgttcttt-aagagttctctgttgttagagagtgactggtgaaatctctgtgttgtgtcttag
||| ||||||||||| ||||||||||||||||| || || |||||||| |||||  | ||||||||||| ||||||| ||||| ||| |   | || | |||||| ||||  | |||   ||  |    ||||    | |   | |||  |  || || | | |||   |  | | | ||| |   | | |  | | |  ||                              
TGCAATGAACAAGCTGTTGATGGAAGAGAATGACCGGTTACAGAAGCAGGTCTCGCAGTTGGTTTATGAAAATGGATACATGAGACAGCAGCTGCAGAGTgtaagctcctccactccaccttcttgctagcataaaagtggcatcatcact--tggttatttctgtccctaatatctgaaggggcttttataatcaaatcgt------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415557|gb|EG458149.1|EG458149
EST:     TCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACT                         GCTTCTGGGACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGAGTGGT
genomic: TCTCCAACTTGGTTTATGAGAATGGATTCATGAAACATCGAATCCACACTgtaagtcctt ... tgtgtcttagGCTTCTGGGACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGAGTGGT