1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttcaatttcttaaatttgtcttttttttcaagtgttgtctcaattaagttgttaacatctctaatagattagatccttaatctctacctttttgaacaaaaagagtaataattagtttcctttgtgtatgcttatag
species | Arabidopsis thaliana |
transcript | AT1G30230.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCEST: gi|152037815|gb|BP798735.2|BP798735
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCEST: gi|152034196|gb|BP821871.2|BP821871
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCEST: gi|164235442|gb|ES091869.1|ES091869
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATEST: gi|152033786|gb|BP815997.2|BP815997
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGAT
EST: GGATTGAAGAAGCTCGACGAGCATTTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGGAGCTCTTGCAAAGCCEST: gi|152037744|gb|BP796307.2|BP796307
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCEST: gi|86078823|gb|DR374580.1|DR374580
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCEST: gi|152037721|gb|BP796075.2|BP796075
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: GATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACCTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCEST: gi|164041995|gb|ES154041.1|ES154041
genomic: GATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTA-CTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGC
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAEST: gi|116416034|gb|EG458626.1|EG458626
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCA
EST: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCCEST: gi|163986763|gb|ES010483.1|ES010483
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: CTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: CTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttcaatttcttaaatttgtcttttttttcaagtgttgtctcaattaagttgttaacatctctaatagattagatccttaatctctacctttttgaacaaaaagagtaataattagtttcctttgtgtatgcttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC