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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttcaatttcttaaatttgtcttttttttcaagtgttgtctcaattaagttgttaacatctctaatagattagatccttaatctctacctttttgaacaaaaagagtaataattagtttcctttgtgtatgcttatag

Basic information

species Arabidopsis thaliana
transcript AT1G30230.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037815|gb|BP798735.2|BP798735
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|47831915|gb|CK121599.1|CK121599
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|152034196|gb|BP821871.2|BP821871
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|164235442|gb|ES091869.1|ES091869
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGAT
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGAT
EST: gi|152033786|gb|BP815997.2|BP815997
EST:     GGATTGAAGAAGCTCGACGAGCATTTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGGAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|152037744|gb|BP796307.2|BP796307
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|116416034|gb|EG458626.1|EG458626
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|86078823|gb|DR374580.1|DR374580
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
EST: gi|152037721|gb|BP796075.2|BP796075
EST:     GATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACCTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGC
genomic: GATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTA-CTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGC
EST: gi|164041995|gb|ES154041.1|ES154041
EST:     GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCA
genomic: GGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCA
EST: gi|163986763|gb|ES010483.1|ES010483
EST:     CTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGG                         ATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC
genomic: CTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttca ... atgcttatagATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCAGCTCTTGCAAAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTACATTACTGGgtaagtttcaatttcttaaatttgtcttttttttcaagtgttgtctcaattaagttgttaacatctctaatagattagatccttaatctctacctttttgaacaaaaagagtaataattagtttcctttgtgtatgcttatag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC