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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G29900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g38970.1 (Oryza sativa), 5'ss of exon 2
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatt-tatttgcag---------------------------------------------------------------------------------
    ||||| ||||| |||||||||||||| ||||| || || || || || || ||||| |||||||| |||||||||||  | || || ||| | |  | | || | |      |  |   |||||  |     |    | |  ||| ||   | |||| |     |||   ||   ||| | || |  |  | |||   ||                                                                                  
---TAAGAAAAAGGTGTTGATTTTGGGTGGCGGGCCCAATCGGATAGGCCAGGGTATTGAGTTTGATTATTGTTGTTGCCATGCTTCATTTGCCCTTCGAG-AGgtttgtttctgcttcatttgtctccactttttggtttttacaattattaacatttttgtgattcaaataaacaagtctgccttatcaagctatatcatcaaataccgtatgttttgttaaaagttcctatatttgttatctaatactgatgggttaattgcttatttgcaatgatttatcag

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 2
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTAC---AGgtatgtctttagacaatctaag-cgtctc-tcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag--------------------------------------------
    | |||||||||  |||| |||||||| |||||||| ||||| || || || ||||| ||||||||||||||||||||  |||| || ||  | |   |||| ||| |||  |  || ||   | |||  | |||  |     |     ||   |||  | |    || |    | || |    | |||| ||| |  | | |||                                             
---TAGGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGTTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttgcatcatttatttcatcttattccagtattttttttctttttcctcagttctgggttgtttg--tgacattgtgagttttcttagtcaact-gcattctatcgtatgaccttatataaatgttttcatatctatttacag

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G061990_T01 (Zea mays), 5'ss of exon 2
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTT---ACAGgtatgtctttagaca--atctaagc---gtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaactt---acttatctactttttttaatttatttgcag---------------------------------------------------------------
    |||||||||||  |||| |||||||| |||||||| ||||| || || || ||||| ||||||||||| ||||||||  |||| || ||  |   | |||| ||| |||   ||  || ||  |     || |  ||  |  |  |   |   |||  |  || ||| ||  ||| |    | ||   || |    |  ||| | ||| |                                                                
---TAAGAAGAAGGTGCTGATATTGGGTGGTGGGCCAAATCGCATAGGCCAGGGCATTGAGTTTGATTACTGCTGTTGCCATGCATCATTTGCACTTCGAGAGgtttgtttttttgcatcatttattcccatcctgtttcagtaatctttttcctcagttctagattgtttgtgagaaattgtgaattttcttagtcaaatgcattcaattgtatggccctgtatttttctgtatggctgttttggcactaatgttttgctcttttatctctttatag

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G28700.1 (Glycine max), 5'ss of exon 3
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag
    |  |||||||||||||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||||| ||  |||| || ||  | | ||| ||| ||       | |    ||         |    ||| || |                                                         
----AGAAAGAAGGTTTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCTGGTTTgttttcttctctttt----gtgataattggattgtagtgaaaag--------------------------------------------------------

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 3
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatcta-agcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag
 | ||  |||||||| ||||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||||| ||  |||| || ||  | ||||| ||| ||       | |  |     |     |||   |||      | | |   |  |||||   ||    ||       | ||  |  |  | |||      
TACCAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttcttctcttttgtaataattggattaaatttcagattttttcgctgtgaaattttttaactggggttcaaatggtgctgctgatgctgtatg-----

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 3
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctt-tagacaatctaagcgtctctcccaaaagccag----taaacattgtttcaactttttt-atgctaaacttacttatctactttttttaatttatttgcag
 |  |  |||||||| ||||||||||||||||| |||||  | ||||||||||||||||| ||||| ||||||||||| ||  |||| || ||  | ||||| ||| || |   |  |   |     |   | | |    ||    |||     ||   |||  |  | |||||  |     || || | || |  || |          
TACTAGAAAGAAGGTCTTGATTTTGGGTGGAGGACCAAATAGAATTGGTCAAGGGATTGAGTTTGACTACTGTTGTTGTCATGCATCCTTTGCTCTTCAGgtttgttttgttctcttttgtattaattagactagattttaggttttaactggggtgcaaacggtgctgatgctgcatgatattgtccaattctgatatt----------

upper sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 2
CAACAAGAAGAAGGTTTTGATTTTGGGTGGAGGGCCAAACCGCATTGGTCAAGGGATTGAATTTGATTACTGTTGTTGCCACACATCTTTCGCCTTACAGgtatgtctttagacaatctaagcgtctctcccaaaagccagtaaacattgtttcaacttttttatgctaaacttacttatctactttttttaatttatttgcag---
  | | |||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||  | ||||||||| ||       |      || | |     |     ||   | |  |   |   |||||   ||  || | | |  ||  || | | ||  |   | ||    
TCAAAGGAAGAAGGTTTTAATTTTAGGTGGAGGACCAAACCGGATTGGTCAAGGTATTGAGTTTGACTACTGCTGCTGTCATACATCCTTTGCTCTCCAGgtatgtttt-----gcttctgctgtttgtaggctatttatgttctcttcttcctatggtttttggtctccacatgcct--cttgttatgtgaacctgggtccattga