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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGATTGAACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAATGGAGTATGATGTTCCCTAAAGCTACACTAGAATGCAATTGGCTTAACACGgtattgtaacttttcaggacttcattgtagtttttcccttggctattttgcttgtttgatgcatctttgtgatgtttcttgtctcctttttttag

Basic information

species Arabidopsis thaliana
transcript AT1G29550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29550.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os01g73880.1 (Oryza sativa), 5'ss of exon 2
TAAGATTGAACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAATGGAGTATGATGTTCCCTAAAGCTACACTAGAATGCAATT-GGCTTAACACGgtattgtaacttttcaggacttcattgtagtttttcccttggctattttgcttgtttgatgcatctttgtgatgtttc-ttgtctcctttttttag
||| || || ||||||||||||||||||||||||||||||||||| |||||||           |||  ||||     |||    | |  | |  ||   |||    ||    |  | |  ||  ||| |    ||   |   |  || | |||  |  |   ||||   | ||  ||     | |||| |  ||||
TAAAATCGAGCCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGTAAATGGA-----------CCTTCAGCTGTGGCAGAGGAAAGTCCGACACAATGTGGTTGCATA---CTgtaagcattatttgaatcacttatttgcacagttatcctttatacaaatatctccctaattctttaccttatcctgtgcttag

upper sequence: AT1G29550.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G113096_T01 (Zea mays), 5'ss of exon 2
TAAGATTGAACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAATGGAGTATGATGTTCCCTAAAGCTACA-CTAGAATGCAATTGGCTTAACACGgta-----ttgtaacttttcaggacttcattgtagtttttcccttggctattttgcttgtttgatgcatc--tttgtgatgtttcttgtctcctttttttag
 |||||||| |||||||||||||| ||||| ||||||||||| || |||||||  || |  |     | ||  | | ||   | ||  | ||||  |||| |||     || ||  || |||| |    |  | ||||||   |||| |   | | ||| ||  |  |  |  |     |   ||     ||  || || |||
CAAGATTGAGCCAAAATGGGAAGACCCTATTTGTGCTAATGGCGGTAAATGGACCATCAGCTGTGGAAGAGGAAAATCTGACACGCTGT-GGCTGCACACCgtaagcagttttattttatcagaa----aagggagttttgttcttgacatctgtccttattatagcctccagtcctccacccttacacactgtttcttgtag

upper sequence: AT1G29550.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G09630.2 (Glycine max), 5'ss of exon 2
TAAGATTGAACCAAAATGGGAAGATCCTATCTGTGCTAATGGAGGAAAATGGAGTATGATGTTCCCTAAAGCTACACTAGAATGCAATTGGCTTAACACGgtattgtaacttttcaggacttcattgtagtttttcc---cttggctattttgcttgtttgatgcatctttgtgatgtttcttgtctcctttttttag--
 |||||||| || || ||||| ||||||||||| |||||||| ||||| |||| |||||  ||||  |  |  | |   ||   || |||| |  | ||||||| ||      | |  || |  || |  |          |    ||| |     |||| ||  |||  | | ||     |   ||  | || | |   
CAAGATTGAGCCCAAGTGGGAGGATCCTATCTGCGCTAATGGGGGAAAGTGGACTATGACCTTCCAAAGGGGAAAATCTGATACCAGTTGGTTATATACGgtatcgttttacattaacacctgcttttgatgcaaaagaattcaattatctgtggagttttatttatcaatttaattagaatgcactaatgttgtcacat