1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATGGAGCAGTAGATGCTTCACCAGTTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaaatgtaagaaattatatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaag
species | Arabidopsis thaliana |
transcript | AT1G29200.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116409041|gb|EG451633.1|EG451633
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116409042|gb|EG451634.1|EG451634
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116409043|gb|EG451635.1|EG451635
genomic: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116408817|gb|EG451409.1|EG451409
genomic: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116408815|gb|EG451407.1|EG451407
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGAGCAGTAGATGCTTCACCAGTTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaaatgtaagaaattatatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG