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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATgtaagaacactttcatagtctctgttattttttgcttcaagctacactgttattggcttacctcaagctatgcaatgagtattcattgaaatggtttcgattggttttgcgtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G27400.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164229631|gb|ES057186.1|ES057186
EST:     GAAGTACTCTCAAGAGCCCGATAATATCACCAAAAT                         CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
genomic: GAAGTACTCTCAAGAGCCCGATAATATCACC-AAATgtaagaacac ... gcgtttgcagCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
EST: gi|47827860|gb|CK117544.1|CK117544
EST:     GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT                         CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
genomic: GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATgtaagaacac ... gcgtttgcagCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
EST: gi|124823160|gb|EH908026.1|EH908026
EST:     AAGTACTCTCAAGAGCCCGTATAATATCACCAAAT                         CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
genomic: AAGTACTCTCAAGAGCCCG-ATAATATCACCAAATgtaagaacac ... gcgtttgcagCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
EST: gi|86074318|gb|DR370075.1|DR370075
EST:     CGATAATATCACCAAAT                         CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
genomic: CGATAATATCACCAAATgtaagaacac ... gcgtttgcagCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
EST: gi|163982884|gb|ES002582.1|ES002582
EST:     GAAGTACTCTCAAGAGCCCGATAATATCACCAAAT                         CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
genomic: GAAGTACTCTCAAGAGCCCGATAATATCACCAAATgtaagaacac ... gcgtttgcagCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
EST: gi|116444090|gb|EG486682.1|EG486682
EST:     GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT                         CTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG
genomic: GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATgtaagaacac ... gcgtttgcagCTTGCAAGGCGAGAGGAGCCGATCTCAGGGTCCACTTCAAG