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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag

Basic information

species Arabidopsis thaliana
transcript AT1G26190.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag
|| || ||||||||| | ||||||||  ||||  |||||||||| || |||||||| || || |||||| | ||||| || |||||||| || |||||||||||    |    ||     |  || |||           || ||| |  |  |  |||| | |   |  |   || |   ||| | |  |  |   |    ||  | 
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatacta-------tcttatcatcccgtaatttgga-cagaacttcctttacatttgaaagatttccttaataagcacagaa

upper sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 2
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag----
||||| ||||| ||||||||||| ||  |||| ||  |||| |||||||||||||| ||||| |||||| ||||||| |||||||||||||| |||||||||||  ||  |||||| |     ||  ||| |        |  ||| |  | ||  | ||     || | ||||  ||||| | |   | |    |  | |||| ||     
GTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaa--atcatcatctggccttttcttatgtgatgc----ttttatcattc-ttactatgg----tgcattatcaggctgcaggctg-catagcatgattaaacataattct

upper sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 2
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag
 |||| ||||| ||||||||||| ||  |||| ||  ||||  ||||||||||||| ||||| |||||| ||||||| |||||||||||||| |||||||||||    | |   |||      |    ||        | || ||  |       || | |  ||  | |   | |     |||  ||| | ||  |           
ATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatctggccttttcttatgtgttgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagca-tgattaacataattctcctg-------

upper sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 1
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtc-ctatgacacattgttttgaaacttgaagtatctt--gctgctgacaaaccttatgttttgaaacttag
|| || ||||| ||||||||||| ||| |||| ||  |||||||||| ||||||||||| || |||||| |||| || ||||||||||| ||||||||||||||   || |  |||   |    |   |      |||||    ||  |||  |  |  || || ||  |  |   |  | | |  | ||   || ||||||         
GTTTTTACTGAAAAGATACTCAACTTTATGCCCAGCATTGCTGTCATATCAATGGACAACTACAATGATGCTAGCCGAATTGTTGATGGCAACTTTGATGgtaaatcttgttttctc--tcatcctgttttttcttgaagctgttaacacaagtcttgatggaatttttaacaggataggtttcaaataagtatt-tgtttta--------