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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAATTTGCTTTCTATGGTTGGATACTGCATTTCCGAGAACCGGAGATTGCTTATTTATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACGgtaagtaagatttctagacataaaagcacaaacccaaaccacatttacttattactatctttccatggtctttag

Basic information

species Arabidopsis thaliana
transcript AT1G26150.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26150.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G19520.1 (Glycine max), 5'ss of exon 3
CGGAATTTGCTTTCTATGGTTGGATACTGCATTTCCGAGAACCGGAGATTGCTTATTTATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACGgtaagtaagatttctagacataaaagcacaaac-ccaaaccacattt-acttattactatctttccatggtctttag------------------------------------------------------------------
||  ||||| ||||  | ||||||||||||||||| || ||| | ||| | ||| | |||||||||||||| ||| | | |||||| || |||||||| |||||      ||   ||   ||   | |  |       |  | ||||   |||    | ||  |  |||   |  |                                                                   
CGCCATTTGGTTTCCTTAGTTGGATACTGCATTTCGGATAACAGAAGACTACTTGTCTATGATTATGTCCCCAACGATACCCTTTATTTTCATCTTCATGgtaaagctagttcagagggctagctgaatgattgtttcatgatattttgattaaatgtgtcagtgaatgtgttcaaaagagtgtattgctaacatttctctttgattaaatttaatctgtgctaactgaaagtgaatttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47832052|gb|CK121736.1|CK121736
EST:     GCTTATTTATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACG                         CCGCAGGAACTCCGGGTCTAGACTGGGCAACACGTGTTAAAATTGCTGCTG
genomic: GCTTATTTATGATTATGTCCCTAACAACAACCTTTACTTCCATCTTCACGgtaagtaaga ... tggtctttagCCGCAGGAACTCCGGGTCTAGACTGGGCAACACGTGTTAAAATTGCTGCTG