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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAGgtttgtttgacatctactaattagggatctttctctctctttttttgagatagttactaaaagtttcattgctaaaggttttgactttactttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G26120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26120.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g02530.t01 (Vitis vinifera), 5'ss of exon 2
GGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAGgtttgtttgacatctactaattagggatct--ttctctctctttttttgag-atagttactaaaagtttcattgctaaaggttttgactttact-ttgcag--
|||||| || |||||||||||||||||| | |||||||| |||||||| || ||||| |||||||| |||||||||||| ||  |  |||  | | ||  |   ||   | || | | ||||||   | ||   |    ||| || | |||| |    |||   || ||    ||     
GGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAGgtctg--tagcattcattgatctgtagtcaaatccttttttttttttcatgcatcactgtctaaaattgc-ttgcaagtaatttaatctctatcactgtgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125288972|gb|EL303057.1|EL303057
EST:     TATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAG                         TCGGATACTACTATTTCTTCTCTCCTTACGTTCGCAGAAGTATAGTTTAC
genomic: TATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAGgtttgtttga ... tactttgcagTCGGATACTACTATTTCTTCTCTCCTTACGTTCGCAGAAGTATAGTTTAC