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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAGTGCATCGGCTAGTTCCGATCCTCGCCAAGTGGTGTGGAAGAGCAACCCGTCAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATgtatgtctgctctttcgtttcatttgatgtctagtctctcatattatatttctatgttgttgttgtaaacacaagttttttacatttccag

Basic information

species Arabidopsis thaliana
transcript AT1G25580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G32690.1 (Glycine max), 5'ss of exon 2
TATGAGTGCATCGGCTAGTTCCGATCC---TCGCCAAGTGGTGTGGAAGAGCAACCCGTCAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATgtatgtctgctctttcgtttca--tttgatgtctagtctctcatattatatttctatgttgttgttgtaaacacaagttttttacatttccag-------
    |    |  |  |   || |   |   | |  ||||  | ||||| ||||| || || |||  ||| || |  ||||| ||||| ||||||||||||||||||||| |    |||   |  |  |||  ||| |        || | |||     || || |  |   | | | |  | ||  |  | | ||        
---CAAAATAAAGAGTGCCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatgtgtatctttttaatctagcttttttgtttcagagtatatttcataggaacattttttcttcacagatatagatattgcaattgtgcatgtaaggt