Sequence
atgc intronic sequence ATGC exonic sequenceAGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagatttatgtagcactagattacgccgttttgttagttggttcaatcaaagcttttttttttgttttgttgtttgtcttgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G25490.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 2
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagattta--tgtagcactagattacgccgttttgttagttggttcaatcaaag--cttttttttttgttt-tgttgtttgtcttgtag-
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GGAAACTTGTGTGAGAGATAAAGCTGTGGAATCACTATGTAGGATTGGATTGCAAATGAGGGAGAGTGATTTGGTTGAGTATTTCATCCCTTTAGTGAAGgtcagattatgctgttccactgatataataaatgcttttgtccttaccatgtattgaatgattgtactttgtagtttgtacgtatagtttttcctttttc
upper sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 2
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagatttatgtagcacta--gattacgccgttttgtta-gttggttcaatcaaagcttttttttttgttttgttgtttgt-cttgtag--
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GGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCATTGGTGAAGgtcagttaatgttttttcatcaatataaatgattttattgttacttcatgtgaaatccatcatgaatgttacagaaattttttccttttcactcatggtt
upper sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 2
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagatttatgtagcactagattacgccgtt-ttgttagttggttcaatca-aagcttttttttttgttttgttgtttgtcttgtag----
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GGAAACCTGTGTGAGAGATAAAGCTGCGGAGTCACTTTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTACATCCCGTTGGTGAAGgtcagctaacgtttttttcatcaatataaatgattttattattacttgtgagattcaccatgaatgttacataatttttttccttttcacttatggttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164153551|gb|ES043554.1|ES043554EST: CTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAG AGGTTAGCGGGTGGTGAATGGTTTGCAGCAAGAG
genomic: CTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttag ... tgtcttgtagAGGTTAGCGGGTGGTGAATGGTTTGCAGCAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTCAGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGgttagtttaggagatttatgtagcactagattacgccgttttgttagttggttcaatcaaagcttttttttttgttttgttgtttgtcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA