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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTTGTTGGAGGTGAAGCATGGTCTTCTCCAAATTGCAGAGACATTGAACTTTCTTCATAATAACGCCCATCTTATTCATCGTGCTGTATCTCCGGAGgttgcttttcgaaatttatagtcaatgcttgttcatcttccttgaagctgttttggtttatgtacaacttcatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G22870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 2
GAGCTTGTTGGAGGTGAAGCATGGTCTTCTCCAAATTGCAGAGACATTGAACTTTCTTCATAATAACGCCCATCTTATTCATCGTGCTGTATCTCCGGAGgttgcttttcgaaatttatagtcaatgcttgttcatcttccttgaagctgttttggtttatgtacaacttcatttgcag--------------------------
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GGGATTGTTGGAGGTGAAGCATGGTCTGCTCCAGGTTTCAGAAACCTTGGAATTTCTTCATAACAATGCTCGTCTTATTCATCGGGCTATATCACCTGAGgttac-----aaattctgcatttaaaagttatttttttcctcaaaatatgcaatagccagactgtatataaatttgaagtggatttcctaaagaaacactattac