1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGTCATCACTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttcttttcacttctatgtaaacatctttccctctctgatgtgaaaactcaactcttgtgaatgtgtatctgcag
species | Arabidopsis thaliana |
transcript | AT1G21900.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAG GGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGTEST: gi|116421116|gb|EG463708.1|EG463708
genomic: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
EST: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAG GGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGTEST: gi|164127602|gb|ES039374.1|ES039374
genomic: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
EST: TATTGCAGCTAAAGACTGGGACTCTGTTGACTAAAAAGGAAAAGATCGAG GGTGTTGAGCTTCAGTEST: gi|124743061|gb|EH834223.1|EH834223
genomic: TATTGCAGCTAAAGACTGGGACTCTGTTG-CTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGT
EST: GTATTGCAGCTAAACACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAG GGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
genomic: GTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttc ... gtatctgcagGGTGTTGAGCTTCAGTTGAGGAGACTTGAAGGGTTGGTGCTGTCGATTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTCATCACTTAGCCAATCCTATAACCCTTGGGGTTGATTGGAAGATGGGTATTGCAGCTAAAGACTGGGACTCTGTTGCTAAAAAGGAAAAGATCGAGgcaagtcttcttttcacttctatgtaaacatctttccctctctgatgtgaaaactcaactcttgtgaatgtgtatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA