Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgatttttttttattgttctgattggtttttgtgtaatggttttttgagtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G21870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os08g01410.1 (Oryza sativa), 5'ss of exon 2
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgatttttttttattgttctgattggtttttgt-gtaatggttttttgagtgcag---------------------------------------
||||||||||| || ||||||||  |||| ||| | || || ||||| ||||| ||||| || |||||||| || |||||||| || |||||||| |||||||    | ||  |     ||   |  | ||     |   | |  | ||| || |   |    | | | |  ||  |   | |||| ||     |                                        
TTTGTGTTCTGCATAAACATTGTACTGGGAAATGTCAGCCTGAGATATATTCCAGTCTCCTTCATGCAGACCATAAAATCTTTCACCCCTGCAACGACAGgttctctgattcctggcctttctaagctctttttttttttgag-ctctttattgtcaattcagtcgttctcagttattccgcttttctgcaattaatgtaagcatattctgatggattcttccattgtaacacag

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 3
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggttttt-------ttaagattgagaatttttcaaaataaagt--gatttttttttattgttctgattggtttttgtgtaatggttttttgagtgcag-----------------------
||||| ||||| || ||||| ||| | || ||| | || ||  | ||||| || ||||| ||||||||||||||||||||||| || |||||||| || |||  ||   ||||        | | ||    | | || || | | |  |  | ||| ||   ||| |  |  |         |||||     |      ||                          
TTTGTCTTCTGCATAAACATCGTGCTCGGAAATGTCAGCCTGCGCTACATCCCAGTCTCCTTTATGCAGACTATCAAATCTTTCACCCCTGCAACCACGGgtagagtcattttgcacctccttacatcatcactattccatattcattttcgttttcttagcattatcatattgctacagcatgtaacaccctccctgatggtctgcttccaatccatgtcatgcag

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G127591_T02 (Zea mays), 5'ss of exon 1
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgatttttttttattgttctgattggtttttgtgtaatggttttttgagtgcag
|| || ||||| || ||||||||| |||| ||| | ||  |  | ||||| || ||||| || |||||||| ||||||||||| ||||||||||| |||||| ||      | || | ||  |   |   |     ||   || ||  ||  | | ||    ||     |     | ||    |  |  || |||
TTCGTCTTCTGCATAAACATTGTGCTGGGAAATGTCAGCTTGCGCTACATCCCAGTCTCCTTCATGCAGACAATCAAATCTTTCACTCCTGCAACCACAGgtata------tcttgatat--accctcactttgtgtatcttgcttgcttgctgtcgtatc-atcatcatcatcatcatctcctgcttggttcag

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 2
-------------------------------------------------------------------TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgatttttttttattgttctgattggtttttgtgtaatggttttttgagtgcag
                                                                   |||||||||||||| ||||||||| | |||||| | || || |||||||| || || |||||||||||||| || ||||| || || |||||||||||||                                                                                               
GCTGAAGCTTAAACCACTGATAACTGTTGACCCTGAAGACCGCTGGAGAAGAATCTTTCCTATGTCATTTGTGTTCTGTATTAACATTGTGCTAGGGAATgtgagcctaagatacataccggtttcttttatgcagacaataaaatcattcacccctgcaacaacag-----------------------------------------------------------------------------------------------

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G23570.1 (Glycine max), 5'ss of exon 2
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgattttt-ttttattgttctgattggtttttgtgtaatggttttttgagtgcag
|||||||||||||| ||||||||| |||||||| | || ||  |||| || || || |||||||||||||| || ||||| || || || ||||||||||||  ||  |  |  |  | |   |  || | |   ||   |||||||   ||||   |  |   ||  | |   | |  ||   || ||       
TTTGTGTTCTGTATTAACATTGTGCTGGGGAATGTGAGCCTACGATATATACCGGTTTCTTTTATGCAGACAATAAAATCATTCACCCCAGCAACAACAGgta-agattaatagttggttctggtgttctgctttatgttgtgatttgaattttgaaggacattttcatctgattttggtgaacttctgcag----

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G42900.1 (Glycine max), 5'ss of exon 2
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataa--agtgatttttttttattgtt-ctgattggtttttgtgtaatggttttttga----gtgcag
|||||||||||||| ||||||||  |||||||| | || ||  |||||||||| || |||||||||||||| || || || || || ||||| || ||||||        |  |     || | | || | | | |||     |   |  ||| |||||   || |  | | |||   |     |||  |||    |  |||
TTTGTGTTCTGTATTAACATTGTTCTGGGGAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAGTCATTCACACCTGCCACCACAGgtaggtttaataatcggtgttaacatttctgccatatatttgctacctgctttatattgagacttaaggatatttacatctgattttggtgaactggcacag

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G11850.1 (Glycine max), 5'ss of exon 2
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataa--agtgatttttttttattgtt-ctgattggtttttgtgtaatggttttttga----gtgcag
|||||||||||||| ||||| ||  |||||||| | || ||  |||||||||| || |||||||||||||| || ||||| || || ||||| || ||||||       ||  |     || | | || | | | |||     |   |  ||| |||||   ||    | | |||   |      ||  |||    |  |||
TTTGTGTTCTGTATTAACATAGTTCTGGGGAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAATCATTCACACCTGCCACCACAGgtaggtttattaatcggtgttaacatttctgccacatatttgctacctgctttatattgagacttgaggatatttacatctgatattggtgaactggcacag

upper sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 2
TTTGTGTTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATGCAGACTATCAAATCTTTAACTCCTGCAACAACAGgtttagggtttttttaagattgagaatttttcaaaataaagtgatttttttttatt-gttctgat-tggttt------ttgtgtaatggtt-ttttgagtgcag---------------
||||| |||||||| ||||| |||||||||||  | ||| |  | |||||||| || ||||||||||||||||| || || || ||||||||||||||||||   |      ||||  ||   |  || ||  ||| | |    |  ||||| ||  | |||||| |  |||       ||| | ||  || |||    | |||               
TTTGTATTCTGTATTAACATAGTGTTGGGGAACGTGAGTTTGCGTTACATTCCAGTTTCTTTTATGCAGACTATAAAGTCATTCACTCCTGCAACAACAGgtcagg------tttagaat---gtgttgttataaacacatcattgctttttcatcagctctgatattatttatattactgtatgatacttgtttctgattcagatatgttttaaacag