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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAGgtcagtcatttatccttatcggttgctgtttttgtaatgcctatgcgttgttctgagacttccttttgttcagcaagataattgcttttcatattgtgct...

Basic information

species Arabidopsis thaliana
transcript AT1G21600.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G21600.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G09200.1 (Glycine max), 5'ss of exon 2
ATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAGgtcagtca---tttatccttatcggttgctgtttttgtaatgcctatgcgttgttctgagacttccttttgttcagcaagataattgcttttcatattgtgct
||||||||||||||||||||||||||| |||| |||||||| |  ||||| || || ||||| || ||||| |||     || ||    ||  ||   |  || |   |   || |    | ||    |  | || | | ||  || | ||   |                 
ATGTATGTTACTCCTCCGGATACAGATGTTTATTCAATTCCCAAGGTTCTCGCTCCAATGCCGCAGAAGgtaagtttcacttcatttagataagtaattcattattacaaaactctatagtatttaatggataccgtctttttggccaaatgtgtag---------------

upper sequence: AT1G21600.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G12370.1 (Glycine max), 5'ss of exon 2
ATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAGgtcagtcatttatcctt-atcggttgctgtttttgtaatgc-ctatgcgtt-gttctgagacttccttttgttcagcaagataattgc-----ttttcatattgtgct----------------------------------------------------
||||||||||||||||| ||||||||| |||| ||| |||| |  ||||| || || ||||| || ||||| |||      ||||| |    |  || |    ||||| |  |||  |||  ||   | |||   |  | ||    |  | | |        |    | ||| || |                                                    
ATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAGgtaagtttcaattcctttagatatgactttaaaagtaattcattattagtttattacaaaactctataatattgcatattacattcatggcaatcggtacattttggtcttaattaaattctctctttaatggatactgtctttttggccaaatgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124763755|gb|EH853885.1|EH853885
EST:     TATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAG                         TATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTCACTGAACCA
genomic: TATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAGgtcagtcatt ... acaagtacagTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTCACTGAACCA
EST: gi|124738095|gb|EH829497.1|EH829497
EST:     ATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAG                         TATATTCGATGTGCAATGAGTG-CTATGGATGTTACAATGTCACTGAA
genomic: ATATTTACTCAATTCCGAGAGTTCTTGCACCGATGCCTCAAAAGgtcagtcatt ... acaagtacagTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTCACTGAA