Sequence
atgc intronic sequence ATGC exonic sequenceATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgttttaatgactatagagatctactgatatttgattgagtctaggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G21380.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G21380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G151050_T01 (Zea mays), 5'ss of exon 2
ATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgttttaatgactatagagatctactgatatttgattgagtc-taggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctag---
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CGGCTGTGGCGTGCGCGGAGAGGGCGACTAACGACATGCTGATCGGCCCGGATTGGGCGGTCAACATCGAGCTCTGCGACATCATCAACATGGATCCCGGgtctgac----cgaagtctcccccccctatctactatgtgaatgtataatttgtctgttctttgatatgtctgggtcggtattgttgccgaacagtgtaaaaaa
upper sequence: AT1G21380.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 2
ATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgttttaatgacta--tagagatctactgatatttgattga-gtctaggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctag-
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ACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGATATGCTCATTGGTCCAGACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgta--ttgttctcgtctctcgctttgtttctcttaatcactaatcgctgcggaaatctctagcgctt--tgcttggagagtcagtggtctgctgtatgaatacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072584|gb|DR368341.1|DR368341EST: GATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAG TCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAA
genomic: GATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgtt ... gtttctctagTCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGTAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATCAACATTGAACTGTGTGACATTATCAACATGGAACCAAGgtaagtcgttttaatgactatagagatctactgatatttgattgagtctaggctaggagcctaggatgcttaaagttttgaccttgttttgtttctctag
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