Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttctctttgattttgcattttcccaatttctcaatttagcttttaagatggttcttctgatagtccacattgtgtttgatttcaatag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G21070.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G00210.2 (Glycine max), 5'ss of exon 2
TGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttc-tctttgattttgcattttcccaatt---tctcaatttagctt----ttaagatggttcttctgatagtccacattgtgtttgatttcaatag
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TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttatatcatgttcatcgcttggacggttaaactttaattttctttcttattaaga-atttcatccaataatctttttaaaatccccttgcttc--
upper sequence: AT1G21070.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G45700.1 (Glycine max), 5'ss of exon 2
TGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttctctttgattttgcattttcccaatttctcaatttagct-tttaagatggttcttctgatagtccacattgtgtttgatttcaatag---------
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TGTTCCTATGTGGGAGCTTATTTGGTTCTCACTGGTTGCCAATATGTCTATCACGGGGATGAACTTTAGCCTCATGCTCAACTCCGTTGGATTCTACCAAgtatggttttacttttatatcacatatcat--gttcatcgcttggactgtttaactttaattttctttt--cttgtttagaatttcatc-caatagtctttttaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877654|gb|AU238485.1|AU238485EST: TCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAG ATATCGAAATTGAGCATGATTCCAGTTGTTTGTGTGATGGAATGGGTTCTA
genomic: TCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttc ... atttcaatagATATCGAAATTGAGCATGATTCCAGTTGTTTGTGTGATGGAATGGGTTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTAGTCTTATGTTGAACTCTGTTGGCTTCTACCAGgtaaagcttctctttgattttgcattttcccaatttctcaatttagcttttaagatggttcttctgatagtccacattgtgtttgatttcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT