1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATCGATCATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAgtgagttaattcacatagatcgatttttatttttttgtttgctagttagttcctagatctctggatttcagatccgaattcaaaaatcgttgtcgttttcttacttattgttttgtggtgatggatgatatag
species | Arabidopsis thaliana |
transcript | AT1G20696.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAATCGATCATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAA GCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGAEST: gi|124883715|gb|EH962617.1|EH962617
genomic: GAATCGATCATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAgtgagttaat ... gatgatatagGCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGA
EST: TCTAAGGCTGAAACCAGGAGCACAAA GCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGA
genomic: TCTAAGGCTGAAACCAGGAGCACAAAgtgagttaat ... gatgatatagGCTCTCTGTGACTAAGAAGCCTGCTAAGGGAGCCAAAGGTGCTGCTAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCGATCATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAgtgagttaattcacatagatcgatttttatttttttgtttgctagttagttcctagatctctggatttcagatccgaattcaaaaatcgttgtcgttttcttacttattgttttgtggtgatggatgatatag
- - - - - - AAGGAG
- - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - GGAGCA