1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGGGGTACAAGAACCCTGTTCTCTTGCTTCATCCTTTAGGAGGTTTCACTAAAGCTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGgtgcatatttgctgttgtttccgagttcgttttcctcataaagaatttgttgtaaagagagattatgatttgatttgcttatgatgtgtag
species | Arabidopsis thaliana |
transcript | AT1G19920.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAG GTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTTEST: gi|86034470|gb|DR330223.1|DR330223
genomic: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGgtgcatattt ... tgatgtgtagGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTT
EST: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAG GTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTTEST: gi|86034473|gb|DR330226.1|DR330226
genomic: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGgtgcatattt ... tgatgtgtagGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTT
EST: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAG GTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTTEST: gi|86034472|gb|DR330225.1|DR330225
genomic: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGgtgcatattt ... tgatgtgtagGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTT
EST: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAG GTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTTEST: gi|125155631|gb|EL185645.1|EL185645
genomic: CTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGgtgcatattt ... tgatgtgtagGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTT
EST: GATGTTAGAATGGAACAACATAGCAAG GTTCTAGAAGATGGNGTTCTTGACCCGAAGACTACTATTGTEST: gi|164230936|gb|ES011766.1|ES011766
genomic: GATGTTAGAATGGAACAACATAGCAAGgtgcatattt ... tgatgtgtagGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGT
EST: GGAACAACATAGCAAG GTTCTAGAAGATGGAGTTCTTGACCCGAAGACCACTATTGTCTCGATCTTT
genomic: GGAACAACATAGCAAGgtgcatattt ... tgatgtgtagGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTATTGTCTCGATCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGGGTACAAGAACCCTGTTCTCTTGCTTCATCCTTTAGGAGGTTTCACTAAAGCTGATGATGTTCCTCTTGATGTTAGAATGGAACAACATAGCAAGgtgcatatttgctgttgtttccgagttcgttttcctcataaagaatttgttgtaaagagagattatgatttgatttgcttatgatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG