1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTATGGAGACGATGAACAAGGCCAATTGTTTGTTAGCAATATGGGTTTTAGTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGgtctgttttgtcaaactgttaaattttgcttcttccttattgggaagagttggttttgattggtgttgtttcttttag
species | Arabidopsis thaliana |
transcript | AT1G19600.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAG TGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGTCTEST: gi|124930712|gb|EL008136.1|EL008136
genomic: AGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGgtctgttttg ... tttcttttagTGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGTCT
EST: GTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAG TGTGTTTGTTTGGTTGATGACTCTGGTAATCGAACAATGCGACCAEST: gi|19874861|gb|AU235692.1|AU235692
genomic: GTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGgtctgttttg ... tttcttttagTGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCA
EST: GTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAG TGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGTNTNEST: gi|125199282|gb|EL214236.1|EL214236
genomic: GTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGgtctgttttg ... tttcttttagTGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGTCTC
EST: GTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAG TGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGT
genomic: GTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGgtctgttttg ... tttcttttagTGTGTTTGCTTGGTTGATGACTCTGGTAATCGAACAATGCGACCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGGAGACGATGAACAAGGCCAATTGTTTGTTAGCAATATGGGTTTTAGTGGTGTGAGTATCTCAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGgtctgttttgtcaaactgttaaattttgcttcttccttattgggaagagttggttttgattggtgttgtttcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA