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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAATCTTCCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatcaaacgcatttttacttagatctgatgttatctgatgatttagctgttgaatctgaagatttggatttgaaattggtcaaattgggattttc...

Basic information

species Arabidopsis thaliana
transcript AT1G19350.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124776386|gb|EH866513.1|EH866513
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACA
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACA
EST: gi|124892858|gb|EH971760.1|EH971760
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACATGG
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACATGG
EST: gi|124989707|gb|EL062001.1|EL062001
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGAACACAAGCCTCTACCTGGTGACATGGC
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGA-CACAAGCCTCTACCTGGTGACATGGC
EST: gi|164093419|gb|EL983705.1|EL983705
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGA
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGA
EST: gi|164100003|gb|EL982172.1|EL982172
EST:     GGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACT
genomic: GGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACT
EST: gi|124892095|gb|EH970997.1|EH970997
EST:     TTCTGAAGCTGGTTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTACCTGGTGACATGGCTGGATCAT
genomic: TTCTGAAGCTGG-TTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTACCTGGTGACATGGCTGGATCAT
EST: gi|124972895|gb|EL046561.1|EL046561
EST:     GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAG                         GGACACAAGCCTCTA
genomic: GTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatca ... tgagcaacagGGACACAAGCCTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACAATCTTCCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGgtcagtatcaaacgcatttttacttagatctgatgttatctgatgatttagctgttgaatctgaagatttggatttgaaattggtcaaattgggattttc

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG