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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAGTATCTACTTCTTGCTTCCATCTGGGAGCGTTTCTCGTCTTCATCGCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaaagctcttgtctttacagtgagtgaacaaaactgtataatgagaagaagaatataatccatgttcttgaatatggcttcttcttcttgccttgatcag

Basic information

species Arabidopsis thaliana
transcript AT1G19130.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125180301|gb|EL197383.1|EL197383
EST:     GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCT
genomic: GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCT
EST: gi|19877300|gb|AU238131.1|AU238131
EST:     GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
genomic: GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
EST: gi|124806125|gb|EH893132.1|EH893132
EST:     GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAG
genomic: GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAG
EST: gi|124874196|gb|EH955841.1|EH955841
EST:     CTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
genomic: CTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
EST: gi|124867036|gb|EH951473.1|EH951473
EST:     CCTGGCACTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
genomic: CCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
EST: gi|124863057|gb|EH947494.1|EH947494
EST:     TACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCCTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
genomic: TACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
EST: gi|164229866|gb|ES070321.1|ES070321
EST:     TTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
genomic: TTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGTCCT
EST: gi|164196632|gb|ES015226.1|ES015226
EST:     GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCT
genomic: GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCT
EST: gi|125249415|gb|EL263500.1|EL263500
EST:     GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACT                         GTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGT
genomic: GCATACCAATGGCTGAAACCTGGCACTTTTATTTGGGTGAACCCCTTACTgtaagttcaa ... ccttgatcagGTAGTGGAACTCTACGATGATGGGAAGTTGAAATTCACATGTCTTGGT